DreEX0008104 @ danRer10
Exon Skipping
Gene
ENSDARG00000002771 | SLC4A5 (1 of 2)
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr5:27465780-27468642:-
Coord C1 exon
chr5:27468464-27468642
Coord A exon
chr5:27466046-27466159
Coord C2 exon
chr5:27465780-27465941
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTGTCTATCCAGTTG
3' ss Score
9.6
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTCTGGACTGGACTCAGTTGAGTAAGAAGGAGTGTGTGAAGTACGGAGGCTCACTGGTGGGACAGTCCTGCAAATATGTTCCAGATCTTGCTCTAATGTCCTTCATTTTGTTCTGCGGCACTTACACCATGACTGTCACTCTGAAGAAGTTCAAATTTAGTCGCTACTTTCCCACTAAG
Seq A exon
TTGAGGAAGTTAATTAGTGACTTCTCCATCTTCATGTCCATCATGACGTTTGTGGGTCTGGACATGCTAATAGGTTTGAAAACACCCAAACTCATTGTGCCTACCGAGTTCAAG
Seq C2 exon
CCCACACGTCCTGACCGAGGATGGTTTGTGATGCCATTTGGAAAGAATCCATGGTGGGTTTACCTGGCAAGCTTCGTCCCTGCTCTCCTCGTCACCATCCTTATCTTCATGGATCAGCAGATCAGCGCTGTTATCGTCAACCGGAAGGAAAACAAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002771-'20-24,'20-23,21-24
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.1=100)
A:
PF0095516=HCO3_cotransp=FE(7.1=100)
C2:
PF0095516=HCO3_cotransp=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAAGTACGGAGGCTCA
R:
AAGGATGGTGACGAGGAGAGC
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]