BtaEX6043062 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10382872-10387320:+
Coord C1 exon
chr11:10382872-10383072
Coord A exon
chr11:10385519-10385632
Coord C2 exon
chr11:10387159-10387320
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGCTCATCTCTCTTTTGCAGGTT
3' ss Score
12.26
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
TACAACCCCCTTAACCTCACAGCGCTGGACTGGTCCCTGCTGAGCAAAAAGGAGTGTTTGAACTATGGTGGGCGCCTACTTGGGGACTCCTGCCAGTTCATCCCAGACCTGGCCCTCATGTCCTTCATCCTTTTCTTCGGGACGTACTCCATGACCCTGACCCTGAAGAAGTTCAAATTCAGCCGCTATTTCCCCACGAAG
Seq A exon
GTTCGCGCCCTAATAGCTGACTTTTCCATCATCTTCTCCATCCTGCTCTTCTGTGGAATTGATGCCTGTTTTGGCTTGGCAACCCCCAAGCTGCTGGTGCCCAGCGAAATTAAG
Seq C2 exon
CCCACACGGCCTGACCGAGGCTGGTTCGTGGCCCCCTTTGGGAAGAACCCGTGGTGGGTGTACCTAGCGAGCATCCTGCCCGCCCTGCTGGTGACCATCCTGATCTTCATGGACCAGCAGATCACTGCCGTCATAGTCAACCGGAAGGAGAACAAGCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884-'23-18,'23-17,24-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.3=100)
A:
PF0095516=HCO3_cotransp=FE(6.9=100)
C2:
PF0095516=HCO3_cotransp=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCCTGCTGAGCAAAAAG
R:
AGGATGCTCGCTAGGTACACC
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]