GgaEX1060021 @ galGal3
Exon Skipping
Gene
ENSGALG00000002429 | C18orf10
Description
NA
Coordinates
chrZ:6640318-6643920:+
Coord C1 exon
chrZ:6640318-6640405
Coord A exon
chrZ:6642568-6642699
Coord C2 exon
chrZ:6643807-6643920
Length
132 bp
Sequences
Splice sites
3' ss Seq
GATGATCAGTCTCATTGCAGATA
3' ss Score
5.17
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAAAACGCCTGCATATTGCCAGAGGATTTAAAGAACTTCTATCTGATGACTGATGGCTTCCAGATGACTTGGAGTGTAAAAATCGATG
Seq A exon
ATACTCCAATGCCCCTGGGCTCCATGGTGATTAACAGTATCTCGAAGCTTTGTCGGCTTGGAGGTTCCTCCATGTACACCGTGCCTAATGCACCATCTCTTGCTGACCTGGAAGATGATACAGATGAGGAGG
Seq C2 exon
GTAATGAAGACAAACCAGAGAAACCACACTTTGATTCTCGTAGTCTTATTTTTGAACTAGACCCGTGCAATGGGAATGGGAAAGTTTGTCTCGTTTATAGGCATACTAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002429-'4-11,'4-10,5-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.267 C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACGCCTGCATATTGCCA
R:
CTGGTTTAGTATGCCTATAAACGAGA
Band lengths:
202-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]