DreEX0080787 @ danRer10
Exon Skipping
Gene
ENSDARG00000011926 | tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040704-49]
Coordinates
chr21:11935598-11937641:-
Coord C1 exon
chr21:11937554-11937641
Coord A exon
chr21:11936529-11936660
Coord C2 exon
chr21:11935598-11935708
Length
132 bp
Sequences
Splice sites
3' ss Seq
CAATGTTTTGTGTCCTACAGATG
3' ss Score
9.94
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
AAAAACAACTGCGCTTTGCCGGAAGATCTCCGAGATTTTTATCTCACAACAGATGGCTTCATGCTTGCCTGGAACTCCAAGTTGGAAA
Seq A exon
ATGAAGTGGTTCCAGTGGGTTGCATGATGATCAACAACGTTGCTCAATTACGCCCTCTGATTCAGTCAAATGTATATTGCCTCCCCAATGCACCAACCTTAGCTGATCTCGACTTTGACGATGACATAGACG
Seq C2 exon
GATCAGACGGCCCAGAAAAGCCTCATTTTGATTTGCGCAGTCGCATCTTTGAGCTGGACTCCTGCAATGGTAATGGCAAAGTTTGCCTTGTTTACAAGAGCTGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011926-'5-4,'5-3,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=FE(19.1=100)
A:
PF093465=SMI1_KNR4=FE(28.9=100)
C2:
PF093465=SMI1_KNR4=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACAACTGCGCTTTGCCG
R:
TGGAGAGCAGCTCTTGTAAACA
Band lengths:
198-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]