Special

MmuEX0002038 @ mm10

Exon Skipping

Gene
Description
tubulin polyglutamylase complex subunit 2 [Source:MGI Symbol;Acc:MGI:1913898]
Coordinates
chr18:25141521-25158323:-
Coord C1 exon
chr18:25158244-25158323
Coord A exon
chr18:25149114-25149242
Coord C2 exon
chr18:25141521-25141637
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCCATTCTTTTTGTCTGTAGAGC
3' ss Score
8.42
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AATCTTCCCCAGGTGTGACCGAGGTGAGCATAATAGAAAAGCTGCCTGCTGAGCGTCATATGATTTCTTCATGGGAACAG
Seq A exon
AGCACATTATTCCACTGGGAAGCATGGTGATTAACGGCATTTCAAAACTGACTCAGCTCATCCAGTCTTCTGTGTACTCACTTCCTAATGCACCAACTCTGGCAGACCTAGAGGACGATACTCAAGAAG
Seq C2 exon
GAAATGAAGACCACCAGCTAGAGAAGCCTCACTTTGACTGTCGCAGTGCAATATTTGAGCTGGATTCATGCAATGGGAATGGGAAAGTTTGCCTCGTCTACAAAAATGGGAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024269_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.074 A=0.205 C2=0.175
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTTCCCCAGGTGTGACCG
R:
GTTTCCCATTTTTGTAGACGAGGC
Band lengths:
194-323
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types