HsaEX0009861 @ hg19
Exon Skipping
Gene
ENSG00000134779 | C18orf10
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:24561]
Coordinates
chr18:34380161-34387897:-
Coord C1 exon
chr18:34387810-34387897
Coord A exon
chr18:34385337-34385465
Coord C2 exon
chr18:34380161-34380274
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTAACGCATGTTCCCCTAGAGC
3' ss Score
7.98
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AAGAATAACTGTGTGATGCCTGAAGATGTGAAGAACTTTTACCTGATGACCAATGGCTTCCACATGACATGGAGTGTGAAGCTGGATG
Seq A exon
AGCACATCATTCCACTGGGAAGCATGGCAATTAACAGCATCTCAAAACTGACTCAGCTCACCCAGTCTTCCATGTATTCACTTCCTAATGCACCCACTCTGGCAGACCTGGAGGACGATACACATGAAG
Seq C2 exon
CCAGTGATGATCAGCCAGAGAAGCCTCACTTTGACTCTCGCAGTGTGATATTTGAGCTGGATTCATGCAATGGCAGTGGGAAAGTTTGCCTTGTCTACAAAAGTGGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134779_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.135
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=FE(19.2=100)
A:
PF093465=SMI1_KNR4=FE(27.8=100)
C2:
PF093465=SMI1_KNR4=FE(24.5=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATAACTGTGTGATGCCTGA
R:
CTGGTTTCCCACTTTTGTAGACA
Band lengths:
202-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)