Special

BtaEX0006358 @ bosTau6

Exon Skipping

Gene
ENSBTAG00000021583 | C24H18ORF10
Description
Bos taurus tubulin polyglutamylase complex subunit 2 (TPGS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102244]
Coordinates
chr24:20619992-20634444:+
Coord C1 exon
chr24:20619992-20620079
Coord A exon
chr24:20622042-20622170
Coord C2 exon
chr24:20634331-20634444
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTAACATTCCCATAGAAC
3' ss Score
7.91
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AAGAATAACTGTGTGCTGCCTGAGGATCTGAAGAACTTTTACCTGATGACCAACGGCTTCCACATGACGTGGAATGTGAAGCTGGATG
Seq A exon
AACATACCATTCCATTGGGCAGCATGGCAATTAACAGCATCTCAAAACTGACTCAACTCAACCAGTCTTCCATGTACTCACTTCCTAACGCACCAACTCTGGCAGACCTGGAGGACGATATACAAGAAG
Seq C2 exon
CCAGTGAGAACCATCCAGAGAAGCCTCACTTTGATTCTCGCAGTGTGATATTTGAGTTGGATCCTTGCAACGGGAATGGGAAGGTTTGCCTCGTCTACAAAAGAGGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021583_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.182 C2=0.179
Domain overlap (PFAM):

C1:
PF093465=SMI1_KNR4=FE(15.7=100)
A:
PF093465=SMI1_KNR4=FE(23.2=100)
C2:
PF093465=SMI1_KNR4=FE(20.5=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATAACTGTGTGCTGCCTGA
R:
CTGGTTTCCCTCTTTTGTAGACGA
Band lengths:
202-331
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development