Special

BtaEX0006357 @ bosTau6

Exon Skipping

Gene
ENSBTAG00000021583 | C24H18ORF10
Description
Bos taurus tubulin polyglutamylase complex subunit 2 (TPGS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102244]
Coordinates
chr24:20592775-20634444:+
Coord C1 exon
chr24:20592775-20592854
Coord A exon
chr24:20619992-20620079
Coord C2 exon
chr24:20634331-20634444
Length
88 bp
Sequences
Splice sites
3' ss Seq
CAGCTGCTCTGTGGTTCTAGAAG
3' ss Score
5.39
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AATCATCCCCAGGTGTGACAGAGGTGACCATCATAGAAAAGCCACCTGCTGAACGTCATATGATTTCTTCATGGGAACAA
Seq A exon
AAGAATAACTGTGTGCTGCCTGAGGATCTGAAGAACTTTTACCTGATGACCAACGGCTTCCACATGACGTGGAATGTGAAGCTGGATG
Seq C2 exon
CCAGTGAGAACCATCCAGAGAAGCCTCACTTTGATTCTCGCAGTGTGATATTTGAGTTGGATCCTTGCAACGGGAATGGGAAGGTTTGCCTCGTCTACAAAAGAGGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021583_MULTIEX1-2/4=1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.481 A=0.000 C2=0.179
Domain overlap (PFAM):

C1:
PF093465=SMI1_KNR4=PU(5.9=40.7)
A:
PF093465=SMI1_KNR4=FE(15.7=100)
C2:
PF093465=SMI1_KNR4=FE(20.5=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCCCAGGTGTGACAGAG
R:
GCAAACCTTCCCATTCCCGTT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development