HsaEX6038713 @ hg38
Exon Skipping
Gene
ENSG00000134779 | TPGS2
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24561]
Coordinates
chr18:36805374-36818973:-
Coord C1 exon
chr18:36818894-36818973
Coord A exon
chr18:36807847-36807934
Coord C2 exon
chr18:36805374-36805502
Length
88 bp
Sequences
Splice sites
3' ss Seq
TAGCTGCTTTGTGATTCTAGAAG
3' ss Score
3.45
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AATCTTCCCCAGGTGTGACTGAGGTGACCATCATAGAAAAGCCTCCTGCTGAACGTCATATGATTTCTTCCTGGGAACAA
Seq A exon
AAGAATAACTGTGTGATGCCTGAAGATGTGAAGAACTTTTACCTGATGACCAATGGCTTCCACATGACATGGAGTGTGAAGCTGGATG
Seq C2 exon
AGCACATCATTCCACTGGGAAGCATGGCAATTAACAGCATCTCAAAACTGACTCAGCTCACCCAGTCTTCCATGTATTCACTTCCTAATGCACCCACTCTGGCAGACCTGGAGGACGATACACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134779-'4-14,'4-11,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=0.000 C2=0.195
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCCCAGGTGTGACTGAG
R:
CTGCCAGAGTGGGTGCATTAG
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains