HsaEX6038713 @ hg19
Exon Skipping
Gene
ENSG00000134779 | C18orf10
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:24561]
Coordinates
chr18:34385337-34398936:-
Coord C1 exon
chr18:34398857-34398936
Coord A exon
chr18:34387810-34387897
Coord C2 exon
chr18:34385337-34385465
Length
88 bp
Sequences
Splice sites
3' ss Seq
TAGCTGCTTTGTGATTCTAGAAG
3' ss Score
3.45
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AATCTTCCCCAGGTGTGACTGAGGTGACCATCATAGAAAAGCCTCCTGCTGAACGTCATATGATTTCTTCCTGGGAACAA
Seq A exon
AAGAATAACTGTGTGATGCCTGAAGATGTGAAGAACTTTTACCTGATGACCAATGGCTTCCACATGACATGGAGTGTGAAGCTGGATG
Seq C2 exon
AGCACATCATTCCACTGGGAAGCATGGCAATTAACAGCATCTCAAAACTGACTCAGCTCACCCAGTCTTCCATGTATTCACTTCCTAATGCACCCACTCTGGCAGACCTGGAGGACGATACACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134779-'3-6,'3-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=PU(15.9=40.7)
A:
PF093465=SMI1_KNR4=FE(19.2=100)
C2:
PF093465=SMI1_KNR4=FE(27.8=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCCCAGGTGTGACTGAG
R:
CTGCCAGAGTGGGTGCATTAG
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)