DreEX0080786 @ danRer10
Exon Skipping
Gene
ENSDARG00000011926 | tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040704-49]
Coordinates
chr21:11936529-11937822:-
Coord C1 exon
chr21:11937743-11937822
Coord A exon
chr21:11937554-11937641
Coord C2 exon
chr21:11936529-11936660
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTGTTCTCCAGAAA
3' ss Score
11.08
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
AGAATCTCCCTGGTGTGCTGGATGTACGGTTTGTAGAGAAAGCCCCTGCAGAAAAGAGATGCCTTCTCTCCTGGGAGCAG
Seq A exon
AAAAACAACTGCGCTTTGCCGGAAGATCTCCGAGATTTTTATCTCACAACAGATGGCTTCATGCTTGCCTGGAACTCCAAGTTGGAAA
Seq C2 exon
ATGAAGTGGTTCCAGTGGGTTGCATGATGATCAACAACGTTGCTCAATTACGCCCTCTGATTCAGTCAAATGTATATTGCCTCCCCAATGCACCAACCTTAGCTGATCTCGACTTTGACGATGACATAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011926-'3-3,'3-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=PU(7.2=40.7)
A:
PF093465=SMI1_KNR4=FE(19.1=100)
C2:
PF093465=SMI1_KNR4=FE(28.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGCTGGATGTACGGTTT
R:
AGCTAAGGTTGGTGCATTGGG
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]