GgaEX1060020 @ galGal3
Exon Skipping
Gene
ENSGALG00000002429 | C18orf10
Description
NA
Coordinates
chrZ:6628997-6642699:+
Coord C1 exon
chrZ:6628997-6629076
Coord A exon
chrZ:6640318-6640405
Coord C2 exon
chrZ:6642568-6642699
Length
88 bp
Sequences
Splice sites
3' ss Seq
AAGCCTCTTGTGATTTGCAGAAA
3' ss Score
6.71
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AGACTTCACCAGGTGTTTCTGATGTGACATTAGTGGAAAAGGAGCCAGCTGATCGCCATGCAATTATTTCATGGGAGCAA
Seq A exon
AAAAACGCCTGCATATTGCCAGAGGATTTAAAGAACTTCTATCTGATGACTGATGGCTTCCAGATGACTTGGAGTGTAAAAATCGATG
Seq C2 exon
ATACTCCAATGCCCCTGGGCTCCATGGTGATTAACAGTATCTCGAAGCTTTGTCGGCTTGGAGGTTCCTCCATGTACACCGTGCCTAATGCACCATCTCTTGCTGACCTGGAAGATGATACAGATGAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002429-'2-10,'2-7,4-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.000 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAAAGGAGCCAGCTGA
R:
TCATCTTCCAGGTCAGCAAGAGA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]