MmuEX0002037 @ mm9
Exon Skipping
Gene
ENSMUSG00000024269 | 5730494M16Rik
Description
RIKEN cDNA 5730494M16 gene [Source:MGI Symbol;Acc:MGI:1913898]
Coordinates
chr18:25300022-25316824:-
Coord C1 exon
chr18:25316745-25316824
Coord A exon
chr18:25309701-25309788
Coord C2 exon
chr18:25300022-25300138
Length
88 bp
Sequences
Splice sites
3' ss Seq
CAAGCAATTTGTGGTTCTAGAAA
3' ss Score
4.21
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AATCTTCCCCAGGTGTGACCGAGGTGAGCATAATAGAAAAGCTGCCTGCTGAGCGTCATATGATTTCTTCATGGGAACAG
Seq A exon
AAAAACAATTGTGTGATGCCTGAGGATGTGAGAAACTTCTACTTGATGACCAATGGTTTTCACATGACCTGGAGTGTGAAGCTAGATG
Seq C2 exon
GAAATGAAGACCACCAGCTAGAGAAGCCTCACTTTGACTGTCGCAGTGCAATATTTGAGCTGGATTCATGCAATGGGAATGGGAAAGTTTGCCTCGTCTACAAAAATGGGAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024269_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.175
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=PU(14.1=40.7)
A:
PF093465=SMI1_KNR4=FE(19.0=100)
C2:
PF093465=SMI1_KNR4=FE(25.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGACCGAGGTGAGCATA
R:
AGACGAGGCAAACTTTCCCAT
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: