GgaEX1060020 @ galGal4
Exon Skipping
Gene
ENSGALG00000026547 | TPGS2
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24561]
Coordinates
chrZ:6966660-6979331:+
Coord C1 exon
chrZ:6966660-6966739
Coord A exon
chrZ:6976950-6977037
Coord C2 exon
chrZ:6979200-6979331
Length
88 bp
Sequences
Splice sites
3' ss Seq
AAGCCTCTTGTGATTTGCAGAAA
3' ss Score
6.71
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AGACTTCACCAGGTGTTTCTGATGTGACATTAGTGGAAAAGGAGCCAGCTGATCGCCATGCAATTATTTCATGGGAGCAA
Seq A exon
AAAAACGCCTGCATATTGCCAGAGGATTTAAAGAACTTCTATCTGATGACTGATGGCTTCCAGATGACTTGGAGTGTAAAAATCGATG
Seq C2 exon
ATACTCCAATGCCCCTGGGCTCCATGGTGATTAACAGTATCTCGAAGCTTTGTCGGCTTGGAGGTTCCTCCATGTACACCGTGCCTAATGCACCATCTCTTGCTGACCTGGAAGATGATACAGATGAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026547-'3-16,'3-13,7-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.000 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000045400fB3663
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAAAGGAGCCAGCTGA
R:
TCATCTTCCAGGTCAGCAAGAGA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]