MmuEX0002037 @ mm10
Exon Skipping
Gene
ENSMUSG00000024269 | Tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:MGI Symbol;Acc:MGI:1913898]
Coordinates
chr18:25149114-25158323:-
Coord C1 exon
chr18:25158244-25158323
Coord A exon
chr18:25151200-25151287
Coord C2 exon
chr18:25149114-25149242
Length
88 bp
Sequences
Splice sites
3' ss Seq
CAAGCAATTTGTGGTTCTAGAAA
3' ss Score
4.21
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AATCTTCCCCAGGTGTGACCGAGGTGAGCATAATAGAAAAGCTGCCTGCTGAGCGTCATATGATTTCTTCATGGGAACAG
Seq A exon
AAAAACAATTGTGTGATGCCTGAGGATGTGAGAAACTTCTACTTGATGACCAATGGTTTTCACATGACCTGGAGTGTGAAGCTAGATG
Seq C2 exon
AGCACATTATTCCACTGGGAAGCATGGTGATTAACGGCATTTCAAAACTGACTCAGCTCATCCAGTCTTCTGTGTACTCACTTCCTAATGCACCAACTCTGGCAGACCTAGAGGACGATACTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024269-'5-3,'5-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGACCGAGGTGAGCATA
R:
GTCTGCCAGAGTTGGTGCATT
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types