RnoEX0092998 @ rn6
Exon Skipping
Gene
ENSRNOG00000054118 | Tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:RGD Symbol;Acc:1310571]
Coordinates
chr18:17343741-17352083:-
Coord C1 exon
chr18:17351996-17352083
Coord A exon
chr18:17349866-17349993
Coord C2 exon
chr18:17343741-17343857
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTCTTTGTCCTGTAGACC
3' ss Score
11.04
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
AAAAACAATTGTGTGATGCCTGAGGATGTGAGAAACTTCTACTTGATGACCAATGGTTTTCACATGACCTGGAGTGTGAAGCTAGATG
Seq A exon
ACCACATTATTCCACTGGGAAGCATGGTGATTAATGGCATTTCCAACTGACTCAGCTCATCCAGTCCTCCGTGTACTCACTTCCTAATGCACCAACTCTGGCGGACCTGGAGGATGATTCTCAAGAAG
Seq C2 exon
GCAATGAAGACCACCAGCTCGAGAAGCCTCACTTTGACTGTCGCAGTGCGATATTTGAGCTGGATTCATGCGGTGGGAATGGGAAAGTTTGCCTCGTCTACAAAAATGGGAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054118_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.209 C2=0.175
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=FE(19.2=100)
A:
PF093465=SMI1_KNR4=FE(17.9=100)
C2:
PF093465=SMI1_KNR4=FE(25.8=100)
Main Skipping Isoform:
ENSRNOT00000082963fB15515
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAATTGTGTGATGCCTGAGGA
R:
CAGGTTTCCCATTTTTGTAGACGA
Band lengths:
202-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]