GgaEX1060135 @ galGal3
Exon Skipping
Gene
ENSGALG00000010973 | TRA2A
Description
NA
Coordinates
chr2:31209565-31210646:-
Coord C1 exon
chr2:31210623-31210646
Coord A exon
chr2:31210357-31210464
Coord C2 exon
chr2:31209565-31209632
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGTATTTTTTCCTAACAGCAG
3' ss Score
8.68
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
TTTTTTGGGGGGTGGGATGGGGTG
Seq A exon
CAGTGGAGGAGGTGGTGGTGGTGGAGCAGGTCGGCGCCGCGACTCTTACTATGATAGGGGGTATGACAGAGGATATGACAGATACGAAGAATACGACTACAGATATAG
Seq C2 exon
GAGACGATCCCCATCGCCTTACTATAGCAGGTACCGGTCACGATCAAGATCCCGTTCCTACAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010973-'15-15,'15-14,16-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.405 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]