HsaEX0066777 @ hg38
Exon Skipping
Gene
ENSG00000164548 | TRA2A
Description
transformer 2 alpha homolog [Source:HGNC Symbol;Acc:HGNC:16645]
Coordinates
chr7:23505746-23507535:-
Coord C1 exon
chr7:23507420-23507535
Coord A exon
chr7:23506138-23506266
Coord C2 exon
chr7:23505746-23505813
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATTTTTACATTTTTCTGCAGTAG
3' ss Score
6.6
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCTATGGAAAGGGCAAATGGAATGGAGCTGGATGGTAGAAGAATTCGGGTGGATTATTCTATAACCAAGAGAGCGCACACACCAACACCAGGCATCTACATGGGCAGACCAACTCA
Seq A exon
TAGTGGTGGGGGTGGTGGAGGAGGCGGCGGCGGTGGAGGTGGAGGTGGTGGCAGACGTCGAGATTCTTACTATGATAGAGGATATGATCGTGGGTATGACAGATATGAAGACTATGATTACCGATACAG
Seq C2 exon
AAGACGATCACCTTCTCCTTATTATAGTCGATATAGATCACGATCAAGATCTCGTTCCTACAGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164548-'29-30,'29-25,31-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=0.699 C2=0.912
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.1=38.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGGGCAAATGGAATGGA
R:
TGGGCTGTAGGAACGAGATCT
Band lengths:
179-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development