RnoEX0093151 @ rn6
Exon Skipping
Gene
ENSRNOG00000009156 | Tra2a
Description
transformer 2 alpha homolog [Source:RGD Symbol;Acc:1562563]
Coordinates
chr4:78906377-78908405:-
Coord C1 exon
chr4:78908290-78908405
Coord A exon
chr4:78907083-78907217
Coord C2 exon
chr4:78906377-78906441
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCCCTTTGTGTTTCTGTAGCAG
3' ss Score
9.17
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCTATGGAAAGAGCAAATGGGATGGAGCTGGATGGTAGAAGAATTCGTGTGGATTATTCTATCACCAAGAGAGCACACACACCTACACCAGGCATTTACATGGGCAGACCAACTCA
Seq A exon
CAGTGGTGGTGGAGGTGGCGGAGGAGGAGGTGGTGGCGGCGGTGGTGGTGGAGGTGGTAGACGGCGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATATGAAGATTATGATTACCGGTACAG
Seq C2 exon
AAGGTCGCCTTCTCCTTACTACAGTCGCTACAGGTCACGATCAAGATCCCGTTCCTATAGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009156_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.717 C2=0.917
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.1=38.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAAGAGCAAATGGGATGGA
R:
TTGGGCTATAGGAACGGGATCT
Band lengths:
178-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]