HsaEX0066777 @ hg19
Exon Skipping
Gene
ENSG00000164548 | TRA2A
Description
transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:16645]
Coordinates
chr7:23545365-23547154:-
Coord C1 exon
chr7:23547039-23547154
Coord A exon
chr7:23545757-23545885
Coord C2 exon
chr7:23545365-23545432
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATTTTTACATTTTTCTGCAGTAG
3' ss Score
6.6
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCTATGGAAAGGGCAAATGGAATGGAGCTGGATGGTAGAAGAATTCGGGTGGATTATTCTATAACCAAGAGAGCGCACACACCAACACCAGGCATCTACATGGGCAGACCAACTCA
Seq A exon
TAGTGGTGGGGGTGGTGGAGGAGGCGGCGGCGGTGGAGGTGGAGGTGGTGGCAGACGTCGAGATTCTTACTATGATAGAGGATATGATCGTGGGTATGACAGATATGAAGACTATGATTACCGATACAG
Seq C2 exon
AAGACGATCACCTTCTCCTTATTATAGTCGATATAGATCACGATCAAGATCTCGTTCCTACAGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164548_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=0.705 C2=0.917
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.1=38.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGGGCAAATGGAATGGA
R:
TGGGCTGTAGGAACGAGATCT
Band lengths:
179-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)