GgaEX1060135 @ galGal4
Exon Skipping
Gene
ENSGALG00000010973 | TRA2A
Description
transformer-2 protein homolog alpha [Source:RefSeq peptide;Acc:NP_001006360]
Coordinates
chr2:31414740-31416275:-
Coord C1 exon
chr2:31416160-31416275
Coord A exon
chr2:31415532-31415639
Coord C2 exon
chr2:31414740-31414807
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGTATTTTTTCCTAACAGCAG
3' ss Score
8.68
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GCAATGGAGCATGCAAACGGAATGGAGCTGGATGGCAGGAGGATTCGGGTGGATTACTCCATCACCAAGAGAGCGCATACACCCACCCCAGGCATATACATGGGCAGGCCGACGCA
Seq A exon
CAGTGGAGGAGGTGGTGGTGGTGGAGCAGGTCGGCGCCGCGACTCTTACTATGATAGGGGGTATGACAGAGGATATGACAGATACGAAGAATACGACTACAGATATAG
Seq C2 exon
GAGACGATCCCCATCGCCTTACTATAGCAGGTACCGGTCACGATCAAGATCCCGTTCCTACAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010973_MULTIEX1-8/8=7-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=0.514 C2=0.750
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.1=38.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCATGCAAACGGAATGGA
R:
TGGACTGTAGGAACGGGATCT
Band lengths:
178-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]