MmuEX6004313 @ mm10
Exon Skipping
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49244868-49246964:-
Coord C1 exon
chr6:49246849-49246964
Coord A exon
chr6:49245476-49245610
Coord C2 exon
chr6:49244868-49244935
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCCCTTCATTTTTCTGTAGCAG
3' ss Score
7.91
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCTATGGAGAGAGCAAATGGGATGGAGCTGGACGGTAGAAGAATCCGTGTGGATTATTCTATCACCAAGAGAGCGCACACACCCACACCAGGCATTTACATGGGCAGACCAACTCA
Seq A exon
CAGCGGTGGTGGAGGTGGCGGAGGAGGAGGTGGCGGAGGAGGAGGTGGTGGCGGTGGTAGACGACGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATACGAAGATTATGATTACCGGTACAG
Seq C2 exon
AAGAAGGTCGCCCTCTCCTTACTACAGTCGCTACAGGTCACGATCGAGATCCCGTTCCTATAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-'17-12,'17-10,19-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.734 C2=0.931
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.1=38.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGAGCAAATGGGATGGA
R:
TGGACTATAGGAACGGGATCTCG
Band lengths:
179-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types