DreEX6072809 @ danRer10
Exon Skipping
Gene
ENSDARG00000007863 | tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
Coordinates
chr19:20602780-20605835:+
Coord C1 exon
chr19:20602780-20602895
Coord A exon
chr19:20602978-20603100
Coord C2 exon
chr19:20605765-20605835
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTAAATGTGACCGTTTCAGTAA
3' ss Score
5.42
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GCAATGGAGCGGGCTAATGGCATGGAACTAGATGGAAGACGCATCAGGGTGGATTATTCCATCACTAAACGTCCACACACACCCACACCAGGCATTTACATGGGTCGACCAACACA
Seq A exon
TAATGGAGGTGGTGGTGGAGGCGGCGGCAGCAGCAGCGGTGGCCGGAGACGAGACTCGTATTATGATCGTGGCTATGATCGCGGCTATGATCGTGGATATGACGAGTATGACTACAGATACAG
Seq C2 exon
CAGGAGGCGCTCTCCGTCCCCCTATTACAGCCGCTACAGGTCTCGCTCCAGATCTCGCTCATACAGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007863-'16-11,'16-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.738 C2=0.960
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.1=38.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAGCGGGCTAATGGCAT
R:
GTATGAGCGAGATCTGGAGCG
Band lengths:
178-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]