GgaEX1062208 @ galGal3
Exon Skipping
Gene
ENSGALG00000012219 | UNC5C
Description
NA
Coordinates
chr4:60237915-60414602:-
Coord C1 exon
chr4:60414479-60414602
Coord A exon
chr4:60257780-60258001
Coord C2 exon
chr4:60237915-60238058
Length
222 bp
Sequences
Splice sites
3' ss Seq
TCTTGTATCTTTTTTTGCAGATG
3' ss Score
11.19
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATGGGGAAGGGGCTGGAGGGCACGGCGGCCCGCTGCGGGCTGGGAATGGGATACCTGCTGCACAGCGTGGTGCTCCCGGCACTGGCCGTCCTGGGGGCCAGCCGGCCCGGCTCCGCCGCGCAAG
Seq A exon
ATGATGATTTTTTTCATGAACTTCCAGAAACTTTTCCTTCTGATCCTCCAGAGCCATTGCCCCACTTTCTCATTGAACCCGAAGAAGCTTACATCGTGAAAAACAAGCCTGTGAATCTGTACTGCAAAGCAAGCCCAGCCACGCAGATCTATTTTAAGTGCAACAGTGAATGGGTTCATCAGAAGGATCATGTGGTGGATGAGAGAGTAGATGAAACCTCTG
Seq C2 exon
GTCTGATCGTCCGTGAGGTGAGCATCGAGATTTCCCGCCAGCAGGTGGAAGAGCTCTTTGGGCCCGAGGACTACTGGTGCCAGTGTGTCGCCTGGAGCTCAGCTGGCACCACCAAGAGCCGCAAGGCCTACGTCCGCATTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012219-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGAAGGGGCTGGAG
R:
ATGCAATGCGGACGTAGGC
Band lengths:
268-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]