DreEX6061718 @ danRer10
Exon Skipping
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:28997628-29065639:+
Coord C1 exon
chr13:28997628-28998297
Coord A exon
chr13:29063199-29063423
Coord C2 exon
chr13:29065496-29065639
Length
225 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTTGGTTTTGTAGATG
3' ss Score
10.19
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ACGGACAACTTTTTCTTCTCGCCGCTACAGGAATAAAAGCTGCCAAGTACTTTTGTTTTCGCTTTATCCACTGTTTTCAGAGAGAAACGCGTTCTTTGTTTCAGTGGAGTTGTAAGTGAGATGAACTTTACGCTGGTTGATGCGTTTCACTACGGACGGGGTCTGCGATGTGCCTGAGCGAACATTTGGTGAAACTGTAGCTTTTACACATTTTGGGGAAAGTTCTGGACCAGGTTTCTATTAAAAACCACCACGGTGCAGCCTGTTTTTATAAGTTTGTAAAGTTCGAGGAGGAACCCGTCTCCATATTTCACACTATTTGAAGTATCCTTCACGGAGGATTCAGCGAGGCTTCAGCCGACTGGAGCGAGAGCACCTGGGGGGCGTTTGGCAGTAGCGTGACCGGGTGAAGATGCTCTCAACGTGGATACACCGCGACCAGTCTCCCGCCTCCCTGCTCGGTTTACTTCTACTCAGCTCAACCTTAGTAATACATGCAG
Seq A exon
ATGGCAGCGATTACAGTGAAGTTCTCCCGGACTCGTTTCCATCAGCTCCTGCCGAACCGCTGCCAGAATTCCAGAGTGAGCCCGAGGATGCATTCATAGTAAAAAACAGACCCGTCAAACTGTCCTGCAAGGCCGCCCCTGCCACACAGATATACTTTAAATGCAATGGAGAATGGGTGAACCAGAATGACCATGTGACCAAGGAAAGTCTGGACCATATCACAG
Seq C2 exon
GTCTGGTAGTGAGAGAAGTAGATATCTCTGTCTCCCGGACGCAGGTAGAGGAGTTGTTTGGGCTGGAGGATTATTGGTGCCAGTGTGTTGCCTGGAGCTCGGCAGGCACCACAAAGAGCCGTCGGGCTTACGTCCGCATCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTTCGAGGAGGAACCCGT
R:
GCACCAATAATCCTCCAGCCC
Band lengths:
300-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]