GgaEX1062204 @ galGal3
Exon Skipping
Gene
ENSGALG00000004569 | UNC5B
Description
NA
Coordinates
chr6:12842726-12862622:+
Coord C1 exon
chr6:12842726-12842828
Coord A exon
chr6:12859168-12859389
Coord C2 exon
chr6:12862479-12862622
Length
222 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCACTGCCATTGCAGGGC
3' ss Score
6.72
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGGGCTCCGCGCTCCGCCATGCCGCCGGCCCGCCGCCTCCTGCTGCCCTTCTTCCTCCTCCTCCTGCTGCCGCTGCATCTTCGCTGGGCGCTGGCCGCCGCAG
Seq A exon
GGCTGGAGTACAGCGAGGTGCTGCCCGACTCCTTCCCATCGGCGCCGGCAGAGACGCTGCCCCACTTCTTGCGGGAGCCACAGGATGCCTACATCGTCAAAAACAAGCCTGTGGAGCTGGTCTGTAGGGCCAACCCTGCCACCCAGATCTACTTCAAGTGCAATGGGGAGTGGGTAAACCAGAACGACCACGTCACCACTGAGAGCCTAGATGAAGTCACAG
Seq C2 exon
GGCTGCTGGTGCGGGAGGTTCAGATCGAGGTGTCCCGGCAGCAGGTGGAGGAGCTCTTTGGCTTGGAGGATTACTGGTGCCAGTGCGTGGCCTGGAGCTCTGCGGGCACCACGAAGAGCCGCAGGGCGTACGTCCGCATTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGCTGCCCTTCTTCC
R:
ATGCAATGCGGACGTACG
Band lengths:
212-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]