RnoEX0096618 @ rn6
Exon Skipping
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30357666-30406295:-
Coord C1 exon
chr20:30406116-30406295
Coord A exon
chr20:30358701-30358925
Coord C2 exon
chr20:30357666-30357809
Length
225 bp
Sequences
Splice sites
3' ss Seq
ATGGTACTCTCCCTCCACAGGCA
3' ss Score
10.47
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGCGAGGACGGCGAGGCGGCGGCGAAGGCGAAGGCGGCGAGGCTGGGGACCGGGAAAGAACCCCGAGGGAGAGGCGCCCGGGCCGGGCGACAGGAGCATGAGGGCCCGGAGCGGGGCGCGGGGCGCGCTGCTGCTGCTGGCGCTGCTGCTCTGCTGGGATCCGACACCGAGCTTAGCAG
Seq A exon
GCATTGACTCTGGTGGCCAGGCACTCCCAGACTCCTTCCCATCAGCACCCGCGGAGCAGCTGCCTCACTTCCTGCTGGAACCAGAGGATGCCTACATCGTAAAGAACAAGCCAGTGGAATTGCACTGCCGAGCCTTCCCTGCCACACAGATCTACTTCAAGTGTAATGGCGAGTGGGTTAGCCAGAAAGGCCACGTCACGCAGGAGAGCCTGGATGAGGCCACAG
Seq C2 exon
GCTTGCGAATACGAGAGGTGCAGATAGAGGTGTCGCGGCAGCAGGTGGAGGAACTCTTTGGGCTCGAGGACTACTGGTGTCAGTGCGTGGCCTGGAGCTCTTCGGGAACCACCAAGAGTCGCCGAGCCTACATCCGCATTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567-'0-2,'0-1,7-2
Average complexity
S
Mappability confidence:
100%=86=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACCGGGAAAGAACCC
R:
CAATGCGGATGTAGGCTCGG
Band lengths:
276-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]