GgaEX1062204 @ galGal4
Exon Skipping
Gene
ENSGALG00000004569 | UNC5B
Description
netrin receptor UNC5B precursor [Source:RefSeq peptide;Acc:NP_001026396]
Coordinates
chr6:11331410-11351367:+
Coord C1 exon
chr6:11331410-11331494
Coord A exon
chr6:11347913-11348134
Coord C2 exon
chr6:11351224-11351367
Length
222 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCACTGCCATTGCAGGGC
3' ss Score
6.72
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGCCGCCGGCCCGCCGCCTCCTGCTGCCCTTCTTCCTCCTCCTCCTGCTGCCGCTGCATCTTCGCTGGGCGCTGGCCGCCGCAG
Seq A exon
GGCTGGAGTACAGCGAGGTGCTGCCCGACTCCTTCCCATCGGCGCCGGCAGAGACGCTGCCCCACTTCTTGCGGGAGCCACAGGATGCCTACATCGTCAAAAACAAGCCTGTGGAGCTGGTCTGTAGGGCCAACCCTGCCACCCAGATCTACTTCAAGTGCAATGGGGAGTGGGTAAACCAGAACGACCACGTCACCACTGAGAGCCTAGATGAAGTCACAG
Seq C2 exon
GGCTGCTGGTGCGGGAGGTTCAGATCGAGGTGTCCCGGCAGCAGGTGGAGGAGCTCTTTGGCTTGGAGGATTACTGGTGCCAGTGCGTGGCCTGGAGCTCTGCGGGCACCACGAAGAGCCGCAGGGCGTACGTCCGCATTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGCTGCCCTTCTTCC
R:
ATGCAATGCGGACGTACG
Band lengths:
212-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]