MmuEX0050629 @ mm10
Exon Skipping
Gene
ENSMUSG00000020099 | Unc5b
Description
unc-5 netrin receptor B [Source:MGI Symbol;Acc:MGI:894703]
Coordinates
chr10:60780095-60831581:-
Coord C1 exon
chr10:60831087-60831581
Coord A exon
chr10:60783058-60783282
Coord C2 exon
chr10:60780095-60780238
Length
225 bp
Sequences
Splice sites
3' ss Seq
ATGGTACTCTCCCTCCACAGGCG
3' ss Score
10.4
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTGTGGCCGGCGGCAGGGCGGGCGAGGGCGCGGAGCCGCGGGGAGCGGCAGGGCGCAGAGGGAAGCACACACCCCACTCGGACAGACTTCGCGGCGCGGCCGCTACGAGCGCCGCTGAGCGCACTCCACTGGGATCGCACAACTTCGGAGCAGGGCGCGGACGGCGCTCGCAGCGGGAGAGCGCGGAAAGGGCGCACCAGAGCCGGGATCCCCAGCGGCGTCCGACTCCCGGAGCGCTCCTAGTCGCCGGGCGGCCTCCCGGCGCTGCGCGGTTGCCTCTGCGCCTACGGAGGGCACGGGCTGGCGCTGCCGGGCGCCTGCGAGAACGGCGAGGCGGCGGCGAAGGCGAAGGCGGCGAGGCTGGGGACCGGGAAAGAACCCCGAGGGAGAGGCGCCCGGGCCGGGGGACAGGAGCATGAGGGCCCGGAGCGGGGTGCGGAGCGCGCTGCTGCTGGCGCTGCTGCTTTGCTGGGATCCGACACCGAGCCTAGCAG
Seq A exon
GCGTTGACTCTGCTGGCCAGGTGCTCCCAGACTCCTACCCATCAGCCCCTGCGGAGCAGCTGCCGTACTTCCTATTGGAGCCACAGGACGCCTACATCGTAAAGAACAAGCCAGTGGAACTGCACTGCAGAGCCTTCCCTGCCACGCAGATCTACTTCAAGTGTAATGGCGAGTGGGTCAGCCAGAATGACCACGTCACACAGGAGAGCCTGGATGAGGCCACAG
Seq C2 exon
GCTTGCGGGTGCGAGAGGTGCAGATCGAGGTGTCACGGCAGCAAGTGGAGGAACTCTTCGGGCTCGAGGACTACTGGTGCCAGTGCGTGGCCTGGAGCTCTTCGGGAACTACCAAGAGTCGCCGAGCCTACATCCGCATTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020099-'0-2,'0-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCCTCTGCGCCTAC
R:
GTAGTCCTCGAGCCCGAAGAG
Band lengths:
298-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types