BtaEX0039138 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27511423-27585559:+
Coord C1 exon
chr28:27511423-27511966
Coord A exon
chr28:27578439-27578663
Coord C2 exon
chr28:27585416-27585559
Length
225 bp
Sequences
Splice sites
3' ss Seq
GAGCCCTCCACTCTCCACAGGCA
3' ss Score
8.3
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCCGGCGAAGACGCCGGAGCCGCGGGTAGCAACTGGGCGCAGGAAGGCGCTTACTGGGGTTGGGACCGCGCGGCGTCAGCCGCTGCGAGCGCCGCTGAGCGCTCTAACCTTCAGTCGTGCAACTTCGTAGCCAGGACGTGAGAACCCAGAGAGCGCTCGAGTCTCGGAGCCGGGGGAGTGCAGAGAGGGGCGCGCCGGAGCCTGACTGGAGAGCGGACGCCAGGCACCCGCCGCGCTCCGAGCGCCCGGCAGCCCTCTGCGAAGCGTGGCTGCCTCTGCCCCAACGGAGGGCACGAGCTGGCGCGACCGGGCGCCGGGGAGGACGGCGAGGAGGAGGCGGCGGCGGCGGAGACGGCGGCGGCGAGGCTGGGGCCAGGGAGAGAGCCCCGGGGGAGAGGCGCCCGAGCCGGGCCGAGGGAGCATGTGGGCCCGGAGCGGAGCGCGGGGCGCGCTGCTGCTGGCGCTGCTGCTCTGCTGGGATCTGAGGCTGAGCCAAGCAG
Seq A exon
GCACTGACTCGGGCAGGGAAGAGCTCCCCGACTCCTTCCCATCGGCTCCAGCAGAGACGCTGCCCCACTTCCTGCAGGAGCCACAGGACGCCTACATCGTGAAGAACAAGCCCGTGGAGCTGGGCTGCCGTGCCTTCCCTGCCACACAGATCTACTTCAAGTGCAACGGCGAGTGGGTCAGCCAGAGTGACCACGTCACCCAAGAGGGCCTGGACGAGGCCACCG
Seq C2 exon
GCCTGCAGGTGCGAGAGGTGCAGATCGAGGTGTCGCGGCAGCAGGTAGAGGAGCTGTTCGGGCTGGAGGATTACTGGTGCCAGTGTGTAGCCTGGAGCTCTGCAGGCACCACCAAGAGTCGCCGGGCCTACGTCCGCATCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270-'0-3,'0-2,8-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.171 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGTGGCTGCCTCTG
R:
CGAACAGCTCCTCTACCTGCT
Band lengths:
300-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development