MmuEX0050633 @ mm10
Exon Skipping
Gene
ENSMUSG00000059921 | Unc5c
Description
unc-5 netrin receptor C [Source:MGI Symbol;Acc:MGI:1095412]
Coordinates
chr3:141465216-141714787:+
Coord C1 exon
chr3:141465216-141465837
Coord A exon
chr3:141677987-141678208
Coord C2 exon
chr3:141714644-141714787
Length
222 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTGTTTCTTTACCAGATG
3' ss Score
11.45
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCCCGGCGCCTGTGCGATCCGAGCGGGCGCGGGGACCCGAGAGCAGCGCCCGCTCGGCTGGCGGCGGAGCTGCGGGAGCTGTGGTGGTGGCCGCGCTACACCTCCCAGCACTTCCCGAGTGGGGGCAGAGCATTAGCAGCCGGGAGACGTCAGTGGCTAGGCGCAGTGGACGAGGGACCTTCAAACTCCTCCTCGGAGGCTCCTCTCCACCCCCTTTGGCCCCTGCCCTTGGAGAAAGTGGAGTGTGGCGCTCAGGCTGCTGTTATTTCTCAGGACTGCCTGGCGGTGGCCGGATCCAGCCTCCTGCCTGGCTGGGCTTTCGGCTGTTTGCGCGTCTCCTGGTGGCGTTTCCCTTCCCCGTACACCTCTGCCGACGATGAGGAAAGGTCTGAGGGCGACAGCGGCCCGCTGCGGACTGGGACTAGGATACTTGCTGCAGATGCTTGTGTTACCTGCCCTGGCCCTGCTAAGCGCCAGTGGCACCGGCTCCGCCGCTCAAG
Seq A exon
ATGATGAATTTTTTCACGAACTCCCAGAAACCTTTCCATCTGACCCACCTGAGCCATTGCCACACTTCCTCATTGAGCCCGAGGAAGCTTACATTGTGAAGAACAAGCCTGTGAACCTGTATTGTAAAGCCAGCCCTGCCACCCAGATCTACTTCAAGTGCAACAGCGAGTGGGTTCATCAGAAGGACCACGTAGTAGACGAGAGAGTAGATGAAACCTCTG
Seq C2 exon
GTCTAATTGTGAGAGAAGTGAGCATTGAGATTTCACGCCAGCAGGTGGAGGAACTGTTTGGGCCTGAAGATTACTGGTGCCAGTGTGTGGCCTGGAGCTCAGCAGGCACTACGAAGAGTCGGAAGGCATACGTGCGCATTGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059921_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTCAGGCTGCTGTTATTT
R:
GCTGGCGTGAAATCTCAATGC
Band lengths:
295-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types