MmuEX0050633 @ mm9
Exon Skipping
Gene
ENSMUSG00000059921 | Unc5c
Description
unc-5 homolog C (C. elegans) [Source:MGI Symbol;Acc:MGI:1095412]
Coordinates
chr3:141128528-141377751:+
Coord C1 exon
chr3:141128528-141128801
Coord A exon
chr3:141340951-141341172
Coord C2 exon
chr3:141377608-141377751
Length
222 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTGTTTCTTTACCAGATG
3' ss Score
11.45
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCTTGGAGAAAGTGGAGTGTGGCGCTCAGGCTGCTGTTATTTCTCAGGACTGCCTGGCGGTGGCCGGATCCAGCCTCCTGCCTGGCTGGGCTTTCGGCTGTTTGCGCGTCTCCTGGTGGCGTTTCCCTTCCCCGTACACCTCTGCCGACGATGAGGAAAGGTCTGAGGGCGACAGCGGCCCGCTGCGGACTGGGACTAGGATACTTGCTGCAGATGCTTGTGTTACCTGCCCTGGCCCTGCTAAGCGCCAGTGGCACCGGCTCCGCCGCTCAAG
Seq A exon
ATGATGAATTTTTTCACGAACTCCCAGAAACCTTTCCATCTGACCCACCTGAGCCATTGCCACACTTCCTCATTGAGCCCGAGGAAGCTTACATTGTGAAGAACAAGCCTGTGAACCTGTATTGTAAAGCCAGCCCTGCCACCCAGATCTACTTCAAGTGCAACAGCGAGTGGGTTCATCAGAAGGACCACGTAGTAGACGAGAGAGTAGATGAAACCTCTG
Seq C2 exon
GTCTAATTGTGAGAGAAGTGAGCATTGAGATTTCACGCCAGCAGGTGGAGGAACTGTTTGGGCCTGAAGATTACTGGTGCCAGTGTGTGGCCTGGAGCTCAGCAGGCACTACGAAGAGTCGGAAGGCATACGTGCGCATTGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059921-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTCAGGCTGCTGTTATTT
R:
GCTGGCGTGAAATCTCAATGC
Band lengths:
295-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: