HsaEX0069381 @ hg19
Exon Skipping
Gene
ENSG00000182168 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:12569]
Coordinates
chr4:96222757-96470357:-
Coord C1 exon
chr4:96469885-96470357
Coord A exon
chr4:96256561-96256782
Coord C2 exon
chr4:96222757-96222900
Length
222 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTCTTCTTTCTCAGATG
3' ss Score
11.75
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CAGACTTCGGCGTGCGGCGGAGCTGCGGCTGCTCCTGCTGCTGGGGGGAGCGGCGGAGGTGGCCGCCTTGCGCCTCCCTGGACTTCCCAAGTGGGGGCAGAGCAGTCGCTCGCGGGAGACGTCAGTTAGAAGGCATTGGGAAAGAGGGACCTTCAAACTCCTCCTCGGCGTCTCCTCTCCTCCCCCTTTTGGCCCCTGCCTTTGGAGAAAGTGGAGTGTGGCGCTTGGTTGTCGTTATTTCTTCGGACTGCTTCGCGGTGCACGGATTCAGCTTCTGCCCAGTGGGGCTTTCAGCTGTTTGCGCGTCTCTCTGTCCCCCTCCCCTCCCCCCGGCACACCTCTGTCTACGATGAGGAAAGGTCTGCGGGCGACAGCGGCCCGCTGCGGACTGGGACTGGGATACTTGCTGCAAATGCTCGTGCTACCTGCCCTGGCCCTGCTCAGCGCCAGCGGCACTGGCTCCGCCGCCCAAG
Seq A exon
ATGATGACTTTTTTCATGAACTCCCAGAAACTTTTCCTTCTGATCCACCTGAGCCTCTGCCACATTTCCTTATTGAGCCTGAAGAAGCTTATATTGTGAAGAATAAGCCCGTGAACCTGTACTGTAAAGCAAGCCCTGCCACCCAGATCTATTTCAAGTGTAATAGTGAATGGGTTCATCAGAAGGACCACATAGTAGATGAAAGAGTAGATGAAACTTCCG
Seq C2 exon
GTCTCATTGTCCGGGAAGTGAGCATTGAGATTTCGCGCCAGCAAGTGGAAGAACTCTTTGGACCTGAAGATTACTGGTGCCAGTGTGTGGCCTGGAGCTCCGCGGGTACCACAAAGAGCCGGAAGGCGTATGTGCGCATTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182168-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCCTTTGGAGAAAGTGG
R:
GCTCACTTCCCGGACAATGAG
Band lengths:
303-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)