GgaEX1062317 @ galGal4
Exon Skipping
Gene
ENSGALG00000012554 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:HGNC:23061]
Coordinates
chr7:35805005-35806869:+
Coord C1 exon
chr7:35805005-35805122
Coord A exon
chr7:35805704-35805862
Coord C2 exon
chr7:35806755-35806869
Length
159 bp
Sequences
Splice sites
3' ss Seq
AGTCTGCCTTTTACACCCAGTTC
3' ss Score
4.56
5' ss Seq
AGCGTAAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
CGCTGGGCTCGTCCACATCAAAAACCCGCACCTGGAGGCGATGGATGAGGACGTCCTGTATCATTTGGACTTGGGAACGAAGACGCACGACCTGCCGGCTATGTTTGGGGACGTAAAG
Seq A exon
TTCGTCTGCGTTGGCGGCAGCCCGAACAGGATGAGGTCATTTGCGCAGTTCATGCACAAGGAGCTGGGGCTGGAGGGCGATGGGGAGGACCTGGCCGACATCTGCGCGGGGACGGACCGCTACGCCATGTACCGCGTGGGACCGGTGCTCTCCATCAGC
Seq C2 exon
CACGGAATGGGCATCCCTTCTGTGTCCATCATGCTTCACGAGCTGATCAAACTGCTGCACCACGCCAAATGCCGAGACGTCACCATTATACGCATTGGTACTTCTGGAGGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012554-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
A:
PF0104815=PNP_UDP_1=FE(20.7=100)
C2:
PF0104815=PNP_UDP_1=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTCGTCCACATCAAAA
R:
GCCTCCAGAAGTACCAATGCG
Band lengths:
227-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]