RnoEX0096788 @ rn6
Exon Skipping
Gene
ENSRNOG00000005341 | Upp2
Description
uridine phosphorylase 2 [Source:RGD Symbol;Acc:1308188]
Coordinates
chr3:44806106-44826776:+
Coord C1 exon
chr3:44806106-44806586
Coord A exon
chr3:44823073-44823231
Coord C2 exon
chr3:44826662-44826776
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCGTTCATTTTTGTTGACAGTTT
3' ss Score
7.61
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GACTGAAAGTGGAATTGCATCCGTGTACAGTTGTCTCAAAGCAAATAAGTCTGGGTGTCACACCAGCCTGATGCTGGGACCAAGGTCACGTGCCACGGACGGGTGCTGGGATCAAAGTTAACAAGCTAACAAACCTGCTCAAAGAGAAAGGATACCACACCTTCCAAGGGAGCCTAACTCCCTGGGGGATGATTCTCTGAGAGCAGGGCTGAGTATAAAAGGCTATCCAGGGATGGTGTTTTGACTTTGTCAGAGGGGTTCAAAATACTCACGGAAGATTTTAGAGAAAATTTCAGGAGGAAACCTCAGTTTGAAGGGGAGGTGGTATTCTGACTTGAGGCTGCATCACTGTGATTAGCTCTGTAATTTAACAGCAGGCTTTCACACTGCTTTTTCCTGCTATCTGCCCAGTGCAGAGTATGGCTTCCATTTTGCCTGCTTCTAATAGAACCATGAGACCTGACAAGAATCCGTATGAGAG
Seq A exon
TTTGTCTGCGTTGGTGGGAGCTCGAACAGAATGAAAGCGTTTGCACTGTTTATGCACAAGGAACTCGGGTTGGAGGGAGATGGAGACGACATCGAGGACATCTGTGCGGGGACAGACAGATACTGCATGTTCAAAACAGGCCCTGTGCTCTCCCTCAGT
Seq C2 exon
CACGGGATGGGCATCCCCTCCATTTCCATTATGCTCCACGAACTCATCAAATTACTCCACCATGCACGCTGCTGCGATGTTACCATCATCAGAATTGGAACATCGGGGGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005341_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0104815=PNP_UDP_1=FE(20.9=100)
C2:
PF0104815=PNP_UDP_1=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTTGAAGGGGAGGTGGT
R:
CAGCGTGCATGGTGGAGTAAT
Band lengths:
247-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]