BtaEX0039201 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012801 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:HGNC:23061]
Coordinates
chr2:38349496-38358891:-
Coord C1 exon
chr2:38358774-38358891
Coord A exon
chr2:38352764-38352922
Coord C2 exon
chr2:38349496-38349610
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTGTTTATTTTTATTATCAGTTT
3' ss Score
7.4
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AAAAAGTTTTGTTCATGTTAAAAATCCTTACCTGGACTCTATGGATGAAGATGTTCTCTATCACTTGGATTTAGGAACAAAAACACACAACCTACCAGAAATGTTTGGGGATGTAAAG
Seq A exon
TTTGTCTGTGTTGGTGGAAGCCCCAACAGAATGAAAGCATTTGCACTGTTTATGCACAAGGAGCTTAGATTGACGGACAGTGAAGAGGACATCAAGGATATCTGTGCTGGGACAGACAGCTATTGTATGTACAAAATTGGTCCCGTGCTCTCCATCAGT
Seq C2 exon
CATGGCATGGGCATCCCCTCCATTTCTATTATGCTTCATGAACTCATTAAATTACTATACCATGCCCGATGCTCTGACGTTATCATTATCAGAATCGGCACATCAGGGGGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012801_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
A:
PF0104815=PNP_UDP_1=FE(20.7=100)
C2:
PF0104815=PNP_UDP_1=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTTAAAAATCCTTACCTGGACT
R:
TATTCCCCCTGATGTGCCGAT
Band lengths:
220-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development