DreEX6035660 @ danRer10
Exon Skipping
Gene
ENSDARG00000036833 | upp2
Description
uridine phosphorylase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-830]
Coordinates
chr9:16170345-16171274:-
Coord C1 exon
chr9:16171160-16171274
Coord A exon
chr9:16170879-16171037
Coord C2 exon
chr9:16170345-16170459
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGTCATTTTCCATAGTTT
3' ss Score
10.37
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ACAGGCGAAGTATGTGAATAATCCTCATCTGGATGGCATGGAAGAGGACATCTTGTACCATTTCAGCCTGAGCACCAAGACCCATGACCTGCCCCAGATGTTTGGCGATGTAAAG
Seq A exon
TTTGTTTGTGTTGGTGGAAGTCCCAATAGAATGAGAACTTTTGCTGAATATATACATGAGCAGCTGGAGATGCCCAGTAACACAGCAGACATTAAAGATATCTGTGAAGGAACAGACAGATACTCGATGTATAAAGTGGGACCTGTGCTTTCCATAAGT
Seq C2 exon
CATGGCATGGGTGTTCCCTCCATCTCCATCATGCTGCATGAGCTCATTAAATTGCTCTATCATGCTCGCTGTCGTGATGTCATCATCTTTCGCATTGGCACATCAGGTGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036833-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
A:
PF0104815=PNP_UDP_1=FE(20.7=100)
C2:
PF0104815=PNP_UDP_1=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCGAAGTATGTGAATAATCCT
R:
TTCCACCTGATGTGCCAATGC
Band lengths:
227-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]