GgaEX1065613 @ galGal4
Exon Skipping
Gene
ENSGALG00000027143 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr2:485033-491135:+
Coord C1 exon
chr2:485033-485159
Coord A exon
chr2:488528-488641
Coord C2 exon
chr2:489265-491135
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTATCTCCTTTACAAACAGAAT
3' ss Score
8.41
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTACCCATCACATTTGATGACATTGCCGTGTACTTCAACGAGCAGGAGTGGGAGAGACTGGACAGCTGGCAGAAGGATCTGTACAAAGCTGTGATGAGGGGTAACTACGAGACCCTGATCTCCCTGG
Seq A exon
AATTTCCCAGAGTGGTGATGCATGTTTTGTCTGTGAGTGCTCAGAAAGAGAAGTTGAGCAGGGAAGAACATCCTGACTCAGAGGTGGAAGATGACCCAGCGGACTTTGGCTCTG
Seq C2 exon
AGGAAGTCCTTCTATTAGAAAATGATAAGGCCTCTGAAGCGGCTTCTCTTCCTGAAAGCGTCAAGGTGAAAGAGGAAGGGCCTATGGCATCACAGGAGGCATCTGCACCCTCTCCTGACTCACAGGTCCAGAAGTGCCCAGAAGGAGAGCAAGCCAAGCCCAAGAGCAAGAAGAAGCCAAGCAGGTATGCGAGCAACGGCCTGCTGATGGGCGACTGTCGGCGCGGCTACGTGCGCGAGTGGTCGCACCCCTGCACCGAGTGCGGAAAGCGCTTCCGTCTGAAAATCAACCTCATCATCCACCAGCGGAGCCACGCCAAGGAGGGGCCCTACGAATGCACGATCTGTGAGATCAGCTTCACTGACAAAAAACGCCTGGTCCTTCACCAGGGCATCCACATGCAAGAAAGGGCCTTTGCGGCCAAGGTCTGGGGGAACACCCACCCAGAATTGAGGATGGGGCCGAGGAGGAAGCTCTGCAGGTCTCCCCATGGCAGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027143_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.795 C2=0.396
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NO
C2:
PF058767=Terminase_GpA=WD(100=41.3),PF0009621=zf-C2H2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=9.1)
Main Skipping Isoform:
ENSGALT00000045404fB3532
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGTGGGAGAGACTGGAC
R:
CTTGGCTTGCTCTCCTTCTGG
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]