RnoEX0101222 @ rn6
Exon Skipping
Gene
ENSRNOG00000026981 | Zfp282
Description
zinc finger protein 282 [Source:RGD Symbol;Acc:1306278]
Coordinates
chr4:77569388-77580714:+
Coord C1 exon
chr4:77569388-77569501
Coord A exon
chr4:77570150-77570263
Coord C2 exon
chr4:77577172-77580714
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCCCCCTAACAACAGAAT
3' ss Score
7.61
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ACTCCCCCATCTCTGCCCAGGACCTTTTGTCCCGGATTAAGCAGGAGGAGCAGCAGTGTGTATGGGATCAGCAGGATTTGGCAGAGAGAGATATTCCCACAGACCCTAATTCAG
Seq A exon
AATCTCTCATCTCAGCACATGACATTTTGTCCTGGATCAAGCAGGAAGAGCAGCCGTACCCATGGGGCCCACGTGACTCAATGGAAGGAGAGCTTGGACTAGACTCTGGGCCCA
Seq C2 exon
GTGACAGCCTACTGCTTGTAAAGAACCCACCTCCAGCTTCTGCGCAGCCCCAAACCCAACCTCACCAGCAGAGCCTGCCCGCCTTGGCCGTGCCGGAGAACCCTGGAGGACCCGGGAGCCGTAGCCTCCTGGAGGACGGCTTCCCTGCGCTTCCAGGCGAGCGCAGTACCGGAGGCGAGCCTCAGCCCGGTGGAGAAGGCAGTGCAGGCGGTGGCGGTGGTGGCGGCAGCGGCGGTGGCGGCGGCACTGGTGCGAGTAGTAGCACAAGTGCCGGTGCGGGTGCAGGCAGTGGCTGCGGCAGCTGCTGCCCGGGCGGCCTCCGGCGGAGCCTCCTGGCACACGGCGCGCGCAGCAAGCCCTACTCTTGCCTGGAATGCGGCAAGACCTTCGGAGTGCGAAAGAGCCTCATCATTCACCACCGCAGCCACACCAAGGAACGGCCCTACGAGTGCGCGGAATGCGAGAAGAGCTTCAACTGCCACTCTGGCCTCATCCGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026981_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=0.949 C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCAGCAGGATTTGGCAG
R:
CTGCACTGCCTTCTCCACC
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]