HsaEX6011141 @ hg38
Exon Skipping
Gene
ENSG00000170265 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:HGNC:13076]
Coordinates
chr7:149212358-149226248:+
Coord C1 exon
chr7:149212358-149212471
Coord A exon
chr7:149213701-149213772
Coord C2 exon
chr7:149225724-149226248
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTTCCATGACAACAGAGT
3' ss Score
5.96
5' ss Seq
CACGCGACT
5' ss Score
-4.55
Exon sequences
Seq C1 exon
ACTCCCCAATTTCTGCCCAGGACCTCTTGTCCCGGATTAAACAGGAGGAGCATCAGTGCGTGTGGGATCAGCAGGATTTGGCAGACAGAGATATTCCCACGGATCCCAATTCAG
Seq A exon
AGTCTCTCATCTCAGCACATGACATTTTGTCATGGATCAAGCAGGAGGAGCAGCCATACCCATGGGGACCAC
Seq C2 exon
GCTCTCCTGCCCTGGGCCTCCCAATTGGTGCTATCTGTTACTGCCCGTGCTCACGGACATGGATACAGACCCTGCTGTGCTCCACACCCTGCAGGCGCCTCGGGAAGCGCCCAAAGGATTCCCCTTCACGTTGGTGCACCTGCTCCATAGCTCCGGGCGCTGCGTCCCGAGGGGCCACAGTCTCCATTTCAGCGTCTTGCATGGCCTGGCACCGGGTGGGGTGGTATGCCCCAGGACCCTTGTTTGTGTCAAAAATGACTTTCCCTGCCCTTGCCGTGGGTCCGGCGTTCCTCCCAGCCGGGATCACAGTGGGCAGCCGGCACCCGGCACCACTTTGGCGAGCGTCCTGCTTCCGCCCTCGCCCTCATCTACGCTGCTCCGCTTTCCTCAGACCCCTTTTTGCCGTGCAAAGGGAATTCTTGACATTAAATAAAAGGTATCCAGATTGCAGACTGCATGTTCACAGAGCTGGGGGTTCTCCAGCTTGCCTACAGTAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170265_MULTIEX1-6/8=5-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.949 C2=0.507
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGATTTGGCAGACAGA
R:
CACCAACGTGAAGGGGAATCC
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains