MmuEX1028431 @ mm10
Exon Skipping
Gene
ENSMUSG00000025821 | Zfp282
Description
zinc finger protein 282 [Source:MGI Symbol;Acc:MGI:2141413]
Coordinates
chr6:47897815-47908485:+
Coord C1 exon
chr6:47897815-47897928
Coord A exon
chr6:47898894-47899007
Coord C2 exon
chr6:47904561-47908485
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCCCCCTAACAACAGAGT
3' ss Score
7.12
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ACTCCCCCATCTCTGCCCAGGACCTTTTGTCCCGGATTAAGCAGGAAGAACAGCAGTGTGTATGGGACCAGCAGGATTTGGCAGAGAGAGATATTCCCACAGATCCTAATTCAG
Seq A exon
AGTCTCTCATCTCAGCACATGACATTTTGTCCTGGATCAAGCAGGAAGAGCAGCCGTACCCATGGGGCCCACGTGACTCAATGGAAGGGGAGCTTGGACTGGACTCTGGGCCCA
Seq C2 exon
GTGACAGCCTGCTGCTTGTAAAGAACCCACCCCCATCTTCTGCGCAGCCCCAAACCCAACCTCATCAGCAGAGCCTGCCCGCCTTGGCTGTGCCGGAGAACCCTGGCGGACCCGGGAGCCGTAGCCTGCTGGAGGATGGCTTCCCTGCTCTTCCAGGCGAGCGCAGTACCGGAGGCGAGGCTCAGCCCACCGGAGAAGGCAGTGCAGGCGGTGGCGGTGGTGGTGGCAGCGGCGGCGGCGGCGGCACTGGTGCGGGTAGTGGCAATAGTACCGGTGCTGGTGCGGGCAGTGGCTGCGGTAGCTGCTGCCCAGGCGGCCTGCGGCGGAGCCTCCTTGCTCACGGCGCGCGCAGCAAGCCCTACTCTTGCCTGGAATGCGGCAAGACCTTCGGCGTGCGAAAGAGCCTCATCATTCATCACCGCAGCCACACCAAGGAACGACCATACGAGTGCGCAGAGTGCGAGAAGAGCTTCAACTGCCACTCTGGCCTCATCCGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025821-'10-14,'10-12,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=0.949 C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCCAGGACCTTTTGTC
R:
GGAAGAGCAGGGAAGCCATC
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types