GgaEX1065613 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:396087-397745:+
Coord C1 exon
chr2:396087-396275
Coord A exon
chr2:396919-397032
Coord C2 exon
chr2:397656-397745
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTATCTCCTTTACAAACAGAAT
3' ss Score
8.41
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGTTTGCTGTGTCCAATCCTGACATCCCGTCCCAGACTGAGACGAATGAAGAGCTCTCTGTCCAAGACAGTCAGGAGCCCCCAAAGCTGTGCATCCAAGACAGTCAGGAGGCCCCACAAACACTGAAAAAGATGGACCAGAAGAAAGAGCCTTTGGGAAAAGATGAAGTCGCTGTGAAAGGTGGCACAA
Seq A exon
AATTTCCCAGAGTGGTGATGCATGTTTTGTCTGTGAGTGCTCAGAAAGAGAAGTTGAGCAGGGAAGAACATCCTGACTCAGAGGTGGAAGATGACCCAGCGGACTTTGGCTCTG
Seq C2 exon
AGGAAGTCCTTCTATTAGAAAATGATAAGGCCTCTGAAGCGGCTTCTCTTCCTGAAAGCGTCAAGGTGAAAGAGGAAGGGCCTATGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024491-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=0.744 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCCAGACTGAGACGAATG
R:
AGGCCCTTCCTCTTTCACCTT
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]