Special

RnoEX0101357 @ rn6

Exon Skipping

Gene
Description
zinc finger protein 398 [Source:RGD Symbol;Acc:1562129]
Coordinates
chr4:77535613-77539966:+
Coord C1 exon
chr4:77535613-77535739
Coord A exon
chr4:77536078-77536191
Coord C2 exon
chr4:77539853-77539966
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTTTCCTCTTCCAGATT
3' ss Score
12.22
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGCCTGTGGCATTTGATGATGTCTCCATCTACTTTTCCACTCCAGAGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATCTCCATGG
Seq A exon
ATTATGCCATGAATCAACCTGATGTTTTATCCCAGATTCAACCAGAAGGAGAACACAGTACAGATGACCAACCAAGGCCAGAAGCAAGTGAGATGCCTGCAGACCCCAGTGAAG
Seq C2 exon
AGCCTGGCCTTTCAACCTCAGACATTCTGTCTTGGATTAAACAAGAGGAAGAGCCTCAGGTTGGAGTCCCCCAGGAGTCTAAAGAGAGTGAGCTGTACAAAGGTACCTATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006703-'7-7,'7-5,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.821 C2=0.846
Domain overlap (PFAM):

C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCATTTGATGATGTCTCCA
R:
ACCTTTGTACAGCTCACTCTCT
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]