HsaEX0073591 @ hg38
Exon Skipping
Gene
ENSG00000197024 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:HGNC:18373]
Coordinates
chr7:149153945-149176581:+
Coord C1 exon
chr7:149153945-149153964
Coord A exon
chr7:149166817-149166930
Coord C2 exon
chr7:149176468-149176581
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTTTCCTCTCCTAGATT
3' ss Score
11.18
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ACATCTGAATGGGACTCCGA
Seq A exon
ATTATGCTATAAATCAACCTGATGTCTTATCTCAGATTCAACCAGAAGGGGAACATAATACAGAGGACCAGGCAGGGCCAGAGGAAAGTGAGATTCCCACAGACCCCAGTGAAG
Seq C2 exon
AGCCTGGTATTTCAACATCAGATATTCTGTCTTGGATTAAACAAGAAGAAGAGCCTCAGGTTGGGGCCCCACCGGAGTCCAAGGAGAGTGACGTGTACAAAAGCACTTATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197024_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.891 C2=0.917
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTGAATGGGACTCCGA
R:
CATAAGTGCTTTTGTACACGTCACT
Band lengths:
131-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development