MmuEX6004161 @ mm10
Exon Skipping
Gene
ENSMUSG00000062519 | Zfp398
Description
zinc finger protein 398 [Source:MGI Symbol;Acc:MGI:1917856]
Coordinates
chr6:47858929-47863217:+
Coord C1 exon
chr6:47858929-47859055
Coord A exon
chr6:47859419-47859532
Coord C2 exon
chr6:47863104-47863217
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTCCACTTTTCCTCTTCTAGATT
3' ss Score
11
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGCCTGTGGCCTTCGATGACGTCTCCATCTACTTTTCCACCCCAGAGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATCTCCATGG
Seq A exon
ATTATGCCATGAATCAACCTGATGTTTTATCTCAGATTCAACCAGAAGGAGAACACAGTACAGATGACCAGCCAAGGCCAGAAGCAAGTGAGATTCCTGCAGACCCCAGTGAAG
Seq C2 exon
AGCCTGGCCTTTCAACCTCAGATATTCTGTCTTGGATTAAACAAGAGGAAGAACCTCAGGTTGGAGTCTCCCAGGAGTCTAAAGAGAGTGAGCTGTACAAAGGTACCTATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062519-'10-11,'10-8,14-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.821 C2=0.756
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCCTTCGATGACGTC
R:
ACCTTTGTACAGCTCACTCTCT
Band lengths:
227-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types