HsaEX0073591 @ hg19
Exon Skipping
Gene
ENSG00000197024 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:18373]
Coordinates
chr7:148851037-148873673:+
Coord C1 exon
chr7:148851037-148851432
Coord A exon
chr7:148863909-148864022
Coord C2 exon
chr7:148873560-148873673
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTTTCCTCTCCTAGATT
3' ss Score
11.18
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ACATCTGAATGGGACTCCGAGTGCCTTACATCCCTGCAGCCCCTTCCTCTTCCTACACCCCCAGCAGCAAATGAGGCACACCTGCAGACAGCAGCTATCTCTCTGTGGACAGTGGTGGCCGCCGTGCAGGCTATAGAGAGGAAGGTGGAGATCCACAGCCGGCGACTCCTACACCTGGAAGGTCGGACAGGGACAGCAGAGAAGAAACTAGCCAGCTGTGAAAAGACAGTTACCGAGCTTGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGAACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACTTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTCCCTCCAGGTATTAAGGGAGATATCCCAAAG
Seq A exon
ATTATGCTATAAATCAACCTGATGTCTTATCTCAGATTCAACCAGAAGGGGAACATAATACAGAGGACCAGGCAGGGCCAGAGGAAAGTGAGATTCCCACAGACCCCAGTGAAG
Seq C2 exon
AGCCTGGTATTTCAACATCAGATATTCTGTCTTGGATTAAACAAGAAGAAGAGCCTCAGGTTGGGGCCCCACCGGAGTCCAAGGAGAGTGACGTGTACAAAAGCACTTATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197024_MULTIEX1-3/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.880 C2=0.915
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGCTGTGAAAAGACAGT
R:
CCCAACCTGAGGCTCTTCTTC
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)