BtaEX6029332 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020445 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:HGNC:18373]
Coordinates
chr4:113060026-113069049:+
Coord C1 exon
chr4:113060026-113060152
Coord A exon
chr4:113061150-113061263
Coord C2 exon
chr4:113068936-113069049
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTCCCATTTTCCTCTCGTAGATT
3' ss Score
10.59
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGCCTGTGACATTCGATGATATCTCCATCTACTTTTCCACTCCAGAATGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGAAACTATGAGTCTCTCATCTCCATGG
Seq A exon
ATTATGCCATGAATCAACCCGATGTCTTATCTCAGATTCAGCCAGAAGGAGACCGCAATACAGAGGACCAGACTGGGCCAGAGGAGAGTGGGATTCCCACCGACCCCAGTGAAG
Seq C2 exon
AGCCTGGCATTTCAACATCAGATATTCTGTCTTGGATTAAACAAGAGGAAGAGACCCAGGTTGGTGCCCCGCAGGAGCCCAAGGAGAGTGACATGTGCAAAGGTACCTATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020445-'6-7,'6-3,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.821 C2=0.974
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTGTGACATTCGATGAT
R:
AGGTACCTTTGCACATGTCACT
Band lengths:
235-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]