GgaEX6003323 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79475117-79477731:-
Coord C1 exon
chr1:79477605-79477731
Coord A exon
chr1:79475805-79475926
Coord C2 exon
chr1:79475117-79475168
Length
122 bp
Sequences
Splice sites
3' ss Seq
ACTGGTGTTTGGCTCTCCAGGTG
3' ss Score
9.37
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
ATCAGTGCCATACTGGCAGAGTCAAGTGACTACAAGGCAGAAGTCCTTTCACCAGAAGGAAACACAGCAAGAGTGTGTGCCAATGAAAGAAAAACCTATATTTGGGCTGTTAGCCCCCTCAGTCTTG
Seq A exon
GTGAGGTGAAATTCACAATTACTGCTGAAGCCAAACTGAATACTAAAGGTGCCAAAAATAGCACACCACCGGAAGAGGAGTCAATTCGCACGGACACCCTGACTCAAACGCTACTAGTTGAG
Seq C2 exon
CCTGAAGGTATTAAAAAAGAATTGACTCAGAGCTCCCTCATCTGCACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.463 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACTGGCAGAGTCAAGTGAC
R:
TTTGTGCAGATGAGGGAGCTC
Band lengths:
170-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]