GgaEX6003323 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75832756-75835373:-
Coord C1 exon
chr1:75835247-75835373
Coord A exon
chr1:75833447-75833568
Coord C2 exon
chr1:75832756-75832807
Length
122 bp
Sequences
Splice sites
3' ss Seq
ACTGGTGTTTGGCTCTCCAGGTG
3' ss Score
9.37
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
ATCAGTGCCATACTGGCAGAGTCAAGTGACTACAAGGCAGAAGTCCTTTCACCAGAAGGAAACACAGCAAGAGTGTGTGCCAATGAAAGAAAAACCTATATTTGGGCTGTTAGCCCCCTCAGTCTTG
Seq A exon
GTGAGGTGAAATTCACAATTACTGCTGAAGCCAAACTGAATACTAAAGGTGCCAAAAATAGCACACCACCGGAAGAGGAGTCAATTCGCACGGACACCCTGACTCAAACGCTACTAGTTGAG
Seq C2 exon
CCTGAAGGTATTAAAAAAGAATTGACTCAGAGCTCCCTCATCTGCACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.463 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACTGGCAGAGTCAAGTGAC
R:
TTTGTGCAGATGAGGGAGCTC
Band lengths:
170-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]