GgaEX6004718 @ galGal3
Exon Skipping
Gene
ENSGALG00000016323 | Q5ZLT2_CHICK
Description
NA
Coordinates
chr1:121541235-121547958:-
Coord C1 exon
chr1:121547848-121547958
Coord A exon
chr1:121543496-121543609
Coord C2 exon
chr1:121541235-121542419
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCCTTCTTTTTGTAGGCT
3' ss Score
11.04
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATAAGTGATCAAGGTGGAGGTGTACCTTTAAGAAAAATAGACAGATTGTTTAACTACATGTACTCAACAGCACCCAGGCCTAGTTTGGAGCCCACAAGAGCTGTTCCTTTG
Seq A exon
GCTGGGTTTGGCTATGGCTTGCCAATTTCTCGTCTGTACGCTAGGTACTTCCAAGGTGACCTGAAACTCTACTCAATGGAAGGTGTTGGATCAGATGCTGTAATTTATTTGAAG
Seq C2 exon
GCCCTTTCAAGTGAATCATTTGAAAGACTTCCTGTTTTTAATAAGTCAGCGTGGCGGCACTACAAGACCACACCTGAAGCAGATGACTGGAGCAATCCTAGCAGTGAACCAAGGGATGCTTCTAAATACAAAGCTAACCGATAATTTGCCACCTTTTGTCTCTGTTGGAGATGACCTCTGCATTCAGTATAAAGTCTCTGCTTTGTTCCAAAATCCTCCAAACCACAATAGCTAATTACTTCTAAACAAAGACCTAATCAGGGCATTAAAAATAGTAAGAACAAAGTGATGATCGGGACTTACAGGAGGCACTAAGCACGTTTGGGATGCGTATCCTGCCTGTTTCACCAGAATATGCTTGGTTGCTTCAGTCATGCATTGACAAAAGGGATTGCACTTAAGTATACACTGTTGTAACAAAAGATACTATTTTAAGTGCCAATTTTTATTCCACTAAGAATTAGCGAATTGTGCAGAATCCCTTTAAATGGTGAATAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016323-'14-18,'14-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.447
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=FE(28.6=100)
A:
PF0251821=HATPase_c=FE(29.4=100)
C2:
PF0251821=HATPase_c=PD(0.8=2.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTACTCAACAGCACCCAGG
R:
ACTGAATGCAGAGGTCATCTCC
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]